1. Shen, H., Chou, J. J.: MemBrain: Improving the Accuracy of Predicting Transmembrane Helices. PLoS ONE, 3(6), e2399 (2008). PDF Available

  2. Schnell, J. R., Chou, J. J.: Structure and mechanism of the M2 proton channel of influenza A virus. Nature, 451(7178), 591-5 (2008). PDF Available

  3. Oxenoid, K., Rice, A. J., Chou, J. J.: Comparing the structure and dynamics of phospholamban pentamer in its unphosphorylated and pseudo-phosphorylated states. Protein Science, 16(9), 1977-83 (2007). PDF Available

  4. Douglas, S. M., Chou, J. J.*, Shih, W. M.*: DNA-nanotube-induced alignment of membrane proteins for NMR structure determination. Proc. Natl. Acad. Sci, 104(16), 6644-6648 (2007). PDF Available

  5. Call, M. E.*, Schnell, J. R.*, Xu, C., Lutz, R. A., Chou, J. J.*, Wucherpfennig, K. W.*: The Structure of the ζζ Transmembrane Dimer Reveals Features Essential for Its Assembly with the T Cell Receptor. Cell, 127(2), 355-368 (2006). PDF Available

  6. Potluri, S., Yan, A. K., Chou, J. J., Donald, B. R., Bailey-Kellogg, C.: Structure Determination of Symmetric Homo-Oligomers by a Complete Search of Symmetry Configuration Space, Using NMR Restraints and van der Waals Packing. PROTEINS: Structure, Function, and Bioinformatics, 65, 203-219 (2006). PDF Available

  7. Wei, R. R., Schnell, J. R., Larsen, N. A., Sorger, P. K., Chou, J. J., Harrison, S. C.: Structure of a central component of the yeast kinetochore: the Spc24p/Spc25p globular domain. Structure, 14(6), 1003-9 (2006). PDF Available

  8. Zweckstetter, M., Schnell, J. R., Chou, J. J.: Determination of the Packing Mode of the Coiled-coil Domain of cGMP-dependent Protein Kinase Ia in Solution Using Charge-Predicted Dipolar Couplings. J. Am. Chem. Soc., 127, 11918-9 (2005). PDF Available

  9. Schnell, J. R., Zhou, G., Zweckstetter, M., Rigby, A. C., Chou, J. J.: Rapid and Accurate Structure Determination of Coiled-coil Domains Using NMR Dipolar Couplings: Application to cGMP-dependent Protein Kinase Ia. Protein Science, 14(9), 2421-8 (2005). PDF Available

  10. Oxenoid, K., Chou, J. J.: The structure of phospholamban pentamer reveals a channel-like architecture in membranes. Proc. Natl. Acad. Sci., 102, 10870-10875 (2005). PDF Available

  11. Zhou, X., Chou, J. J.*, Wong, S. T.*: Protein Structure Similarity Analysis by Using Interaction Matrix Based Principle Component Correlation. BMC Bioinformatics., 7:40 (2006). PDF Available

  12. Wang, J. F., Schnell, J. R., Chou, J. J.: Amantadine partition and localization in phospholipids membrane: a solution NMR study. Biochem. Biophys. Research Comm., 324, 212-217 (2004). PDF Available

  13. Chou, J. J., Baber, J. L., Bax, A.: Characterization of phospholipids mixed micelles by translational diffusion. J. Biol. NMR, 29, 299-308 (2004). PDF Available

  14. Chou, J. J., Case, D., and Bax, A.: Insights in mobility of methyl-bearing sidechains in proteins from Jcc and Jcn couplings. J. Am. Chem. Soc., 125, 8959-8966 (2003). PDF Available

  15. Chou, J. J., Kaufman, J. D., Stahl, S. J., Wingfield, P. T., and Bax, A..: Micelle-Induced Curvature in a Water-Insoluble HIV-1 Env Peptide Revealed by NMR Dipolar Coupling Measurement in Stretched Polyacrylamide Gel. J. Am. Chem. Soc., 124, 2450-2451 (2002). PDF Available

  16. Chou, J. J., Li, S., Klee, C. B., and Bax, A.:  Solution structure of Ca2+–calmodulin reveals flexible hand-like properties of its domains.  Nature Structural Biology, 8, 990-997 (2001). PDF Available

  17. Chou, J. J. and Bax, A.: Protein Side-Chain Rotamers from Dipolar Couplings in a Liquid Crystalline Phase. J. Am. Chem. Soc., 123, 3844-3845 (2001).

  18. Bax, A., Chou, J. J., and Ramirez, B:   Invited Review:  Liquid Crystalline Samples: Application to Macromolecular Structure Determination. Methods in Enzymology (2001).

  19. Chou, J. J.*, Gaemers, S.*, Howder, B., Louis, J. M., and Bax, A.:  A simple apparatus for generating stretched polyacrylamide gels, yielding uniform alignment of proteins and detergent micelles. J. Biol. NMR, 21, 377-382 (2001).

  20. Chou, J. J., Li, S., and Bax, A.: Study of Conformational Rearrangement and Refinement of Structural Homology Models by the Use of Heteronuclear Dipolar Couplings. J. Biol. NMR, 18, 217-227 (2000).

  21. Chou, J. J., Delaglio, F., and Bax, A.: Measurement of One-Bond 15N-13C’ Dipolar Couplings in Medium Sized Proteins. J. Biol. NMR, 18, 101-105 (2000).

  22. Chou, J. J., Li, H., Salvessen, G. S., Yuan, J., and Wagner, G.:  Solution Structure of BID, an Intracellular Amplifier of Apoptotic Signaling. Cell, 96, 615-624 (1999).

  23. Zhou, P., Chou, J. J., Olea, R. S., Yuan, J.,  and Wagner, G.: Solution structure of Apaf-1 CARD and its interaction with caspase-9 CARD: A structural basis for specific adaptor/caspase interaction, Proc. Natl. Acad. Sci., 96, 11265-11270 (1999)

  24. Lugovskoy, A. A., Zhou, P., Chou, J. J., McCarty, J. S., Li, P., and Wagner, G.:  Solution Structure of the CIDE-N Domain of CIDE-B and a Model for CIDE-N/CIDE-N Interactions in the DNA Fragmentation Pathway of Apoptosis. Cell, 99, 747–755 (1999).

  25. Chou, J. J., Matsuo, H., Duan, H., and Wagner, G.: Solution Structure of the RAIDD CARD Domain and Model for CARD/CARD Interaction in Caspase-2 and Caspase-9 Recruitment. Cell, 94, 171-180 (1998).

  26. Chou, J. J. and Shakhnovich, E. I.: A Study on Local-Global Cooperativity in Protein Collapse. J. Phys. Chem. B, 103, 2535-2542 (1999).

  27. Chou, J. J.: A Formulation for Correlating Properties of Peptides and Its Application to Predicting Human Immunodeficiency Virus Protease-Cleavable Sites in Proteins. Biopolymers, 33, 1405-1414 (1993).

  28. Chou, J. J.: Predicting Cleavability of Peptide Sequences by HIV Protease via Correlation-Angle Approach. J. Protein Chem., 12, 291-302 (1993).

  29. Chou, J. J. and Zhang, C.T.: A Joint Prediction of the Folding Types of 1490 Human Proteins from their Genetic Codons. J. Theor. Biol., 161, 251-262 (1993).

  30. Althaus, I. W., Chou, J. J., Gonzales, A. J., Deibel, M. R., Chou, K. C., Kezdy, F. J., Romero, D. L., Aristoff, P. A., Tarpley, W. G., and Reusser, F.: Steady-state Kinetic Studies with the Non-nucleoside HIV-1 Reverse Transcriptase Inhibitor U-87201E. J. Biol. Chem., 268, 6119-6124 (1993).

  31. Althaus, I. W., Chou, J. J., Gonzales, A. J., Deibel, M. R.,  Chou, K. C.,   Kezdy, F.  J., Romero, D. L., Palmer, J. R., Thomas, R. C., Aristoff, P. A., Tarpley, W. G., and Reusser, F.:  Kinetic Studies with the Non-nucleoside HIV-1 Reverse Transcriptase Inhibitor U-88204E. Biochemistry, 32, 6548-6554 (1993).

  32. Althaus, I. W.,  Gonzales, A. J.,  Chou, J. J., Romero, D. L., Deibel, M. R., Chou, K. C., Kezdy, F. J., Rensnick, L., Busso, M. E., So, A. G., Downey, K. M., Thomas, R. C.,  Aristoff, P. A., Tarpley, W. G., and  Reusser, F.: The Quinoline U-78036 is a Potent Inhibitor of HIV-1 Reverse Transcriptase. J. Biol. Chem., 268, 14875-14880 (1993).

©2005 Chou Research Group